

CUTANA™ Non-Hot Start 2X PCR Master Mix for CUT&Tag
{"url":"https://www.epicypher.com/products/epigenetics-kits-and-reagents/cutana-cut-tag-assays/cutana-non-hot-start-2x-pcr-master-mix-for-cut-tag","add_this":[{"service":"facebook","annotation":""},{"service":"email","annotation":""},{"service":"print","annotation":""},{"service":"twitter","annotation":""},{"service":"linkedin","annotation":""}],"gtin":null,"id":"753","bulk_discount_rates":[],"can_purchase":true,"meta_description":"CUTANA™ High Fidelity 2X PCR Master Mix for CUT&Tag / ChIC assays","category":["Epigenetics Kits and Reagents/CUTANA™ CUT&Tag Assays"],"AddThisServiceButtonMeta":"","main_image":{"data":"https://cdn11.bigcommerce.com/s-y9o92/images/stencil/{:size}/products/753/752/DNA_Vector_Draw_Final-w-border-01__76823.1591894876.1280.1280__20924.1594475393.jpg?c=2","alt":"CUTANA™ Non-Hot Start 2X PCR Master Mix for CUT&Tag"},"add_to_wishlist_url":"/wishlist.php?action=add&product_id=753","shipping":{"calculated":true},"num_reviews":0,"weight":"0.01 LBS","custom_fields":[{"id":"1068","name":"Pack Size","value":"50 reactions"},{"id":"1069","name":"Internal Comment","value":"extra in bottom of Venom"}],"sku":"15-1018","description":"<div class=\"product-general-info\">\n <ul class=\"product-general-info__list-left\">\n <li class=\"product-general-info__list-item\">\n <strong>Type: </strong>Polymerase\n </li>\n <li class=\"product-general-info__list-item\">\n <strong>Source: </strong><em>E. coli</em>\n </li>\n </ul>\n <ul class=\"product-general-info__list-right\">\n <li class=\"product-general-info__list-item\">\n <strong>Epitope Tag: </strong>None\n </li>\n </ul>\n</div>\n\n<div class=\"service_accordion product-droppdown\">\n <div class=\"container\">\n <div id=\"prodAccordion\">\n <div id=\"ProductDescription\" class=\"Block Panel current\">\n <h3 class=\"sub-title1\">Description</h3>\n <div\n class=\"ProductDescriptionContainer product-droppdown__section-description-specific\">\n <p>\n CUTANA Non-Hot Start 2X PCR Master Mix for CUT&Tag is specifically\n formulated to amplify next generation sequencing (NGS) libraries\n from CUTANA™ pAG-Tn5 tagmented DNA generated during CUT&Tag\n (EpiCypher\n <a\n href=\"/products/epigenetics-kits-and-reagents/cutana-pag-tn5-for-cut-and-tag\"\n >15-1017</a\n >) [1]. This ready-to-use master mix only requires the addition of\n primers and the tagmented chromatin to achieve high fidelity\n amplification of NGS libraries.\n </p>\n <p>\n <strong>NOTE:</strong> this product was previously named \"CUTANA™\n High Fidelity 2X PCR Master Mix\"\n </p>\n </div>\n </div>\n </div>\n <div id=\"prodAccordion\">\n <div id=\"ProductDescription\" class=\"Block Panel current\">\n <h3 class=\"sub-title1\">Validation Data</h3>\n <div\n class=\"ProductDescriptionContainer product-droppdown__section-description-specific\">\n <section class=\"image-picker\">\n <div class=\"image-picker__left\">\n <div\n class=\"image-picker__main-content_active image-picker__main-content\">\n <div class=\"image-picker__header-content\">\n <button class=\"image-picker__left-arrow\">\n <svg\n class=\"image-picker__svg-left\"\n width=\"24\"\n height=\"24\"\n viewBox=\"0 0 24 24\">\n <path\n d=\"M16.67 0l2.83 2.829-9.339 9.175 9.339 9.167-2.83 2.829-12.17-11.996z\" />\n </svg>\n </button>\n <a\n href=\"/content/images/products/proteins/15-1018-next-gen-sequencing.jpeg\"\n target=\"_blank\"\n class=\"image-picker__main-image-link\"\n ><img\n loading=\"lazy\"\n alt=\"15-1018-next-gen-sequencing\"\n src=\"/content/images/products/proteins/15-1018-next-gen-sequencing.jpeg\"\n class=\"image-picker__main-image\" />\n <span class=\"image-picker__main-image-caption\"\n >(Click to enlarge)</span\n ></a\n >\n <button class=\"image-picker__right-arrow\">\n <svg\n class=\"image-picker__svg-right\"\n width=\"24\"\n height=\"24\"\n viewBox=\"0 0 24 24\">\n <path\n d=\"M7.33 24l-2.83-2.829 9.339-9.175-9.339-9.167 2.83-2.829 12.17 11.996z\" />\n </svg>\n </button>\n </div>\n <p>\n <span class=\"image-picker__span-content\"\n ><strong\n >Figure 1: CUT&Tag Next-Generation Sequencing (NGS)\n libraries</strong\n ><br />\n CUT&Tag was performed as described above. Recovered DNA was\n directly PCR amplified to produce sequence-ready libraries.\n Agilent TapeStation traces for libraries derived from\n negative control Rabbit IgG (top) and H3K27me3 (bottom) are\n shown. Excised DNA is highly enriched for mononucleosomes\n (peak at ~300 bp reflects ~150 bp insert size).\n </span>\n </p>\n </div>\n <div class=\"image-picker__main-content\">\n <div class=\"image-picker__header-content\">\n <button class=\"image-picker__left-arrow\">\n <svg\n class=\"image-picker__svg-left\"\n width=\"24\"\n height=\"24\"\n viewBox=\"0 0 24 24\">\n <path\n d=\"M16.67 0l2.83 2.829-9.339 9.175 9.339 9.167-2.83 2.829-12.17-11.996z\" />\n </svg>\n </button>\n <a\n href=\"/content/images/products/proteins/15-1018-next-gen-sequencing-data.jpeg\"\n target=\"_blank\"\n class=\"image-picker__main-image-link\"\n ><img\n loading=\"lazy\"\n alt=\"15-1018-next-gen-sequencing-data\"\n src=\"/content/images/products/proteins/15-1018-next-gen-sequencing-data.jpeg\"\n class=\"image-picker__main-image\" />\n <span class=\"image-picker__main-image-caption\"\n >(Click to enlarge)</span\n ></a\n >\n <button class=\"image-picker__right-arrow\">\n <svg\n class=\"image-picker__svg-right\"\n width=\"24\"\n height=\"24\"\n viewBox=\"0 0 24 24\">\n <path\n d=\"M7.33 24l-2.83-2.829 9.339-9.175-9.339-9.167 2.83-2.829 12.17 11.996z\" />\n </svg>\n </button>\n </div>\n <p>\n <span class=\"image-picker__span-content\"\n ><strong>Figure 2: CUT&Tag NGS data </strong><br />\n CUT&Tag was performed as described above. A 116 kb\n representative locus is shown for IgG, H3K4me3, or H3K27me3\n antibodies. NGS libraries amplified using the CUTANA Non-Hot\n Start 2X PCR Master Mix represented the expected genomic\n distribution of H3K4me3 and H3K27me3. Image was generated\n using the Integrative Genomics Viewer (IGV, Broad\n Institute).\n </span>\n </p>\n </div>\n <div class=\"image-picker__main-content\">\n <div class=\"image-picker__header-content\">\n <button class=\"image-picker__left-arrow\">\n <svg\n class=\"image-picker__svg-left\"\n width=\"24\"\n height=\"24\"\n viewBox=\"0 0 24 24\">\n <path\n d=\"M16.67 0l2.83 2.829-9.339 9.175 9.339 9.167-2.83 2.829-12.17-11.996z\" />\n </svg>\n </button>\n <a\n href=\"/content/images/products/methods/cut-and-tag-methods.png\"\n target=\"_blank\"\n class=\"image-picker__main-image-link\"\n ><img\n loading=\"lazy\"\n alt=\"cut-and-tag-methods\"\n src=\"/content/images/products/methods/cut-and-tag-methods.png\"\n class=\"image-picker__main-image\" />\n <span class=\"image-picker__main-image-caption\"\n >(Click to enlarge)</span\n ></a\n >\n <button class=\"image-picker__right-arrow\">\n <svg\n class=\"image-picker__svg-right\"\n width=\"24\"\n height=\"24\"\n viewBox=\"0 0 24 24\">\n <path\n d=\"M7.33 24l-2.83-2.829 9.339-9.175-9.339-9.167 2.83-2.829 12.17 11.996z\" />\n </svg>\n </button>\n </div>\n <p>\n <span class=\"image-picker__span-content\"\n ><strong>CUT&Tag methods </strong><br />\n CUT&Tag was performed on 100k K562 nuclei with 0.5 µg of\n either IgG (EpiCypher\n <a\n href=\"/products/nucleosomes/snap-cutana-spike-in-controls/cutana-rabbit-igg-cut-run-negative-control-antibody\"\n >13-0042</a\n >), H3K4me3 (EpiCypher\n <a\n href=\"/products/antibodies/snap-chip-certified-antibodies/histone-h3k4me3-antibody-snap-chip-certified-cutana-cut-run-compatible\"\n >13-0041</a\n >), or H3K27me3 (ThermoFisher MA5-11198) antibodies\n following the EpiCypher Direct-to-PCR CUT&Tag\n <a href=\"/protocols/\">protocol</a>. CUT&Tag DNA was directly\n PCR amplified using CUTANA Non-Hot Start 2X PCR Master Mix\n to produce NGS libraries. Libraries were run on an Illumina\n NextSeq2000 with paired-end sequencing (2x50 bp). Sample\n sequencing depth was 0.3 million reads (IgG), 1.7 million\n reads (H3K4me3), and 3.8 million reads (H3K27me3). Data were\n aligned to the hg19 genome using Bowtie2. Data were filtered\n to remove duplicates, multi-aligned reads, and blacklist\n regions.\n </span>\n </p>\n </div>\n </div>\n <aside class=\"image-picker__right\">\n <div class=\"image-picker__gallery\">\n <img\n loading=\"lazy\"\n alt=\"15-1018-next-gen-sequencing\"\n src=\"/content/images/products/proteins/15-1018-next-gen-sequencing.jpeg\"\n width=\"200\"\n class=\"image-picker__side-image image-picker__side-image_active\"\n role=\"button\" />\n <img\n loading=\"lazy\"\n alt=\"15-1018-next-gen-sequencing-data\"\n src=\"/content/images/products/proteins/15-1018-next-gen-sequencing-data.jpeg\"\n class=\"image-picker__side-image\"\n role=\"button\" />\n <img\n loading=\"lazy\"\n alt=\"cut-and-tag-methods\"\n src=\"/content/images/products/methods/cut-and-tag-methods.png\"\n class=\"image-picker__side-image\"\n role=\"button\" />\n </div>\n </aside>\n </section>\n </div>\n </div>\n </div>\n <div id=\"prodAccordion\">\n <div id=\"ProductDescription\" class=\"Block Panel\">\n <h3 class=\"sub-title1\">Technical Information</h3>\n <div\n class=\"ProductDescriptionContainer product-droppdown__section-description\">\n <div class=\"product-tech-info\">\n <div class=\"product-tech-info__line-item\">\n <div class=\"product-tech-info__line-item-left\">\n <b>Storage</b>\n </div>\n <div class=\"product-tech-info__line-item-right\">\n Stable for 6 months at -20°C from date of receipt. The\n master mix should be completely thawed on ice and resuspended\n prior to use.\n </div>\n </div>\n <div class=\"product-tech-info__line-item\">\n <div class=\"product-tech-info__line-item-left\">\n <b>Formulation</b>\n </div>\n <div class=\"product-tech-info__line-item-right\">\n A high fidelity thermostable DNA polymerase with 3’→5’\n exonuclease activity fused to a processivity-enhancing domain in\n a 2x master mix containing 200 µM dNTPs and 4 mM Mg<sup>2+</sup>\n in a proprietary buffer.\n </div>\n </div>\n </div>\n </div>\n </div>\n </div>\n <div id=\"prodAccordion\">\n <div id=\"ProductDescription\" class=\"Block Panel\">\n <h3 class=\"sub-title1\">Application Notes</h3>\n <div\n class=\"ProductDescriptionContainer product-droppdown__section-description\">\n <p>\n <strong>Recommended use</strong>: For detailed instructions\n regarding non-hot start PCR cycling conditions in CUT&Tag, see\n CUTANA™ Direct-to-PCR CUT&Tag\n <a href=\"/resources/protocols/\">protocol</a>.\n </p>\n\n <p>\n <strong>NOTE</strong>: Not recommended for use with primers or\n templates containing uracil.\n </p>\n </div>\n </div>\n </div>\n <div id=\"prodAccordion\">\n <div id=\"ProductDescription\" class=\"Block Panel\">\n <h3 class=\"sub-title1\">References</h3>\n <div\n class=\"ProductDescriptionContainer product-droppdown__section-description\">\n <strong>Background References:</strong>\n <br />\n [1] Kaya-Okur et al. <em>Nat. Commun.</em> (2019). PMID:\n <a\n href=\"https://pubmed.ncbi.nlm.nih.gov/31036827/\"\n target=\"_blank\"\n title=\"CUT&Tag for efficient epigenomic profiling of small samples and single cells\"\n >31036827</a\n ><br />\n <br />\n <strong>Product References:</strong>\n <iframe\n class=\"airtable-embed\"\n src=\"https://airtable.com/embed/shrNVh8cMlhS7zB7g?backgroundColor=purple&viewControls=on\"\n frameborder=\"0\"\n onmousewheel=\"\"\n width=\"100%\"\n height=\"300\"\n style=\"background: transparent; border: 1px solid #ccc\"></iframe>\n </div>\n </div>\n </div>\n <div id=\"prodAccordion\">\n <div id=\"ProductDescription\" class=\"Block Panel\">\n <h3 class=\"sub-title1\">Documents & Resources</h3>\n <div\n class=\"ProductDescriptionContainer product-droppdown__section-description\">\n <div class=\"product-documents\">\n <a\n href=\"/content/documents/tds/15-1018.pdf\"\n target=\"_blank\"\n class=\"product-documents__link\">\n <svg\n version=\"1.1\"\n id=\"Layer_1\"\n xmlns=\"http://www.w3.org/2000/svg\"\n xmlns:xlink=\"http://www.w3.org/1999/xlink\"\n x=\"0px\"\n y=\"0px\"\n viewBox=\"0 0 228 240\"\n style=\"enable-background: new 0 0 228 240\"\n xml:space=\"preserve\"\n class=\"product-documents__icon\"\n alt=\"16-0030 Datasheet\">\n <g>\n <path\n class=\"product-documents__svg-pdf\"\n d=\"M191.92,68.77l-47.69-47.69c-1.33-1.33-3.12-2.08-5.01-2.08H45.09C41.17,19,38,22.17,38,26.09v184.36\n c0,3.92,3.17,7.09,7.09,7.09h141.82c3.92,0,7.09-3.17,7.09-7.09V73.8C194,71.92,193.25,70.1,191.92,68.77z M177.65,77.06h-41.7\n v-41.7L177.65,77.06z M178.05,201.59H53.95V34.95h66.92v47.86c0,5.14,4.17,9.31,9.31,9.31h47.86V201.59z\" />\n </g>\n <rect\n x=\"20\"\n y=\"112\"\n class=\"product-documents__svg-background\"\n width=\"146\"\n height=\"76\" />\n <g>\n <path\n class=\"product-documents__svg-pdf\"\n d=\"M23.83,125.68h22.36c5.29,0,9.41,1.33,12.35,4c2.94,2.67,4.42,6.39,4.42,11.18c0,4.78-1.47,8.51-4.42,11.18\n c-2.94,2.67-7.06,4-12.35,4H34.59v18.29H23.83V125.68z M44.81,147.9c5.38,0,8.07-2.32,8.07-6.97c0-2.39-0.67-4.16-2-5.31\n c-1.33-1.15-3.36-1.73-6.07-1.73H34.59v14.01H44.81z\" />\n <path\n class=\"product-documents__svg-pdf\"\n d=\"M69.92,125.68h18.91c5.29,0,9.84,0.97,13.66,2.9c3.82,1.93,6.74,4.72,8.76,8.35\n c2.02,3.63,3.04,7.98,3.04,13.04c0,5.06-1,9.42-3,13.08c-2,3.66-4.91,6.45-8.73,8.38c-3.82,1.93-8.4,2.9-13.73,2.9H69.92V125.68z\n M88.07,165.63c10.35,0,15.52-5.22,15.52-15.66c0-10.4-5.17-15.59-15.52-15.59h-7.38v31.26H88.07z\" />\n <path\n class=\"product-documents__svg-pdf\"\n d=\"M122.57,125.68h32.84v8.49h-22.22v11.18h20.84v8.49h-20.84v20.49h-10.63V125.68z\" />\n </g>\n </svg>\n <span class=\"product-documents__info\">Technical Datasheet</span>\n </a>\n </div>\n </div>\n </div>\n </div>\n </div>\n</div>\n","tags":[],"warranty":"","price":{"without_tax":{"formatted":"$135.00","value":135,"currency":"USD"},"tax_label":"Sales Tax"},"detail_messages":"","availability":"","page_title":"CUTANA™ High Fidelity 2X PCR Master Mix","cart_url":"https://www.epicypher.com/cart.php","max_purchase_quantity":0,"mpn":null,"upc":null,"options":[],"related_products":[{"id":764,"sku":null,"name":"CUTANA™ pAG-Tn5 for CUT&Tag","url":"https://www.epicypher.com/products/epigenetics-kits-and-reagents/cutana-pag-tn5-for-cut-and-tag","availability":"","rating":null,"brand":{"name":null},"category":["Epigenetics Kits and Reagents","Epigenetics Kits and Reagents/CUTANA™ CUT&Tag Assays"],"summary":"\n \n \n Type: Transposase\n \n \n Mol Wgt: 191 kDa\n \n \n \n ","image":{"data":"https://cdn11.bigcommerce.com/s-y9o92/images/stencil/{:size}/products/764/750/2020_CUTTag_icon_RGB_Andy_L__93238.1592491196.png?c=2","alt":"CUTANA™ pAG-Tn5 for CUT&Tag"},"images":[{"data":"https://cdn11.bigcommerce.com/s-y9o92/images/stencil/{:size}/products/764/750/2020_CUTTag_icon_RGB_Andy_L__93238.1592491196.png?c=2","alt":"CUTANA™ pAG-Tn5 for CUT&Tag"}],"date_added":"17th Jun 2020","pre_order":false,"show_cart_action":true,"has_options":true,"stock_level":null,"low_stock_level":null,"qty_in_cart":0,"custom_fields":[{"id":1005,"name":"Internal Comment","value":"extra boxes in bottom shelf of Venom"}],"num_reviews":null,"weight":{"formatted":"0.01 LBS","value":0.01},"demo":false,"price":{"without_tax":{"currency":"USD","formatted":"$765.00","value":765},"price_range":{"min":{"without_tax":{"currency":"USD","formatted":"$765.00","value":765},"tax_label":"Sales Tax"},"max":{"without_tax":{"currency":"USD","formatted":"$2,970.00","value":2970},"tax_label":"Sales Tax"}},"tax_label":"Sales Tax"},"add_to_wishlist_url":"/wishlist.php?action=add&product_id=764"},{"id":986,"sku":null,"name":"CUTANA™ CUT&Tag Kit","url":"https://www.epicypher.com/products/epigenetics-kits-and-reagents/cutana-cut-and-tag-kit","availability":"","rating":null,"brand":{"name":null},"category":["Antibodies/CUTANA™ CUT&Tag Antibodies","Epigenetics Kits and Reagents/CUTANA™ CUT&Tag Assays"],"summary":"\n \n \n \n Description\n \n \n The CUTANA™ CUT&Tag Kit offers a comprehensive so","image":{"data":"https://cdn11.bigcommerce.com/s-y9o92/images/stencil/{:size}/products/986/1117/Save_15_with_code_CTK15__15909.1678741803.png?c=2","alt":"CUTANA™ CUT&Tag Kit"},"images":[{"data":"https://cdn11.bigcommerce.com/s-y9o92/images/stencil/{:size}/products/986/1117/Save_15_with_code_CTK15__15909.1678741803.png?c=2","alt":"CUTANA™ CUT&Tag Kit"},{"data":"https://cdn11.bigcommerce.com/s-y9o92/images/stencil/{:size}/products/986/1116/Epicypher_CUTANA_CUTTag_Box__75004.1678458194.png?c=2","alt":"CUTANA™ CUT&Tag Kit"}],"date_added":"8th Mar 2023","pre_order":false,"show_cart_action":true,"has_options":true,"stock_level":null,"low_stock_level":null,"qty_in_cart":0,"custom_fields":[{"id":1219,"name":"Pack Size","value":"48 Reactions"}],"num_reviews":null,"weight":{"formatted":"0.01 LBS","value":0.01},"demo":false,"price":{"without_tax":{"currency":"USD","formatted":"$2,695.00","value":2695},"tax_label":"Sales Tax"},"add_to_wishlist_url":"/wishlist.php?action=add&product_id=986"}],"shipping_messages":[],"rating":0,"meta_keywords":"CUTANA™ High Fidelity 2X PCR Master Mix, pcr mix, CUT&Tag, cut and tag, cleavage under targets and tagmentation, chromatin immunocleavage, ChIC, 15-1018","show_quantity_input":1,"title":"CUTANA™ Non-Hot Start 2X PCR Master Mix for CUT&Tag","gift_wrapping_available":false,"min_purchase_quantity":0,"customizations":[],"images":[{"data":"https://cdn11.bigcommerce.com/s-y9o92/images/stencil/{:size}/products/753/752/DNA_Vector_Draw_Final-w-border-01__76823.1591894876.1280.1280__20924.1594475393.jpg?c=2","alt":"CUTANA™ Non-Hot Start 2X PCR Master Mix for CUT&Tag"}]} Pack Size: 50 reactions
- Type: Polymerase
- Source: E. coli
- Epitope Tag: None
Description
CUTANA Non-Hot Start 2X PCR Master Mix for CUT&Tag is specifically formulated to amplify next generation sequencing (NGS) libraries from CUTANA™ pAG-Tn5 tagmented DNA generated during CUT&Tag (EpiCypher 15-1017) [1]. This ready-to-use master mix only requires the addition of primers and the tagmented chromatin to achieve high fidelity amplification of NGS libraries.
NOTE: this product was previously named "CUTANA™ High Fidelity 2X PCR Master Mix"
Validation Data
Figure 1: CUT&Tag Next-Generation Sequencing (NGS)
libraries
CUT&Tag was performed as described above. Recovered DNA was
directly PCR amplified to produce sequence-ready libraries.
Agilent TapeStation traces for libraries derived from
negative control Rabbit IgG (top) and H3K27me3 (bottom) are
shown. Excised DNA is highly enriched for mononucleosomes
(peak at ~300 bp reflects ~150 bp insert size).
Figure 2: CUT&Tag NGS data
CUT&Tag was performed as described above. A 116 kb
representative locus is shown for IgG, H3K4me3, or H3K27me3
antibodies. NGS libraries amplified using the CUTANA Non-Hot
Start 2X PCR Master Mix represented the expected genomic
distribution of H3K4me3 and H3K27me3. Image was generated
using the Integrative Genomics Viewer (IGV, Broad
Institute).
CUT&Tag methods
CUT&Tag was performed on 100k K562 nuclei with 0.5 µg of
either IgG (EpiCypher
13-0042), H3K4me3 (EpiCypher
13-0041), or H3K27me3 (ThermoFisher MA5-11198) antibodies
following the EpiCypher Direct-to-PCR CUT&Tag
protocol. CUT&Tag DNA was directly
PCR amplified using CUTANA Non-Hot Start 2X PCR Master Mix
to produce NGS libraries. Libraries were run on an Illumina
NextSeq2000 with paired-end sequencing (2x50 bp). Sample
sequencing depth was 0.3 million reads (IgG), 1.7 million
reads (H3K4me3), and 3.8 million reads (H3K27me3). Data were
aligned to the hg19 genome using Bowtie2. Data were filtered
to remove duplicates, multi-aligned reads, and blacklist
regions.
Technical Information
Application Notes
Recommended use: For detailed instructions regarding non-hot start PCR cycling conditions in CUT&Tag, see CUTANA™ Direct-to-PCR CUT&Tag protocol.
NOTE: Not recommended for use with primers or templates containing uracil.